Occurrence Associations module

This module enables an extra table in the Indicia database called occurrence_associations, which allows 2 records to be linked together where there is an interaction or some other association. This allows everything from predator-prey relationships or parasite-host relationships through to ecological networks to be recorded.

Once the module is enabled there are several ways to use the module. Before data can be stored for an occurrence association, it is necessary to prepare term lists with terms that allow the metadata about the association to be defined. Because the terms available for recording association metadata (such as the interaction type or the part of the organism interacted with) are highly specific to each discipline, the module allows you to define your own lists of terms to pick from for each attribute. The following lists of terms should be created:

Association type - e.g. ‘preys upon’, ‘parasitises’. Generally these terms should be written assuming that the actor in the relationship could be written to the left of the term and the acted upon organism to the right - lion preys upon impala, rather than impala is preyed upon by lion.

Association position - optional, e.g. ‘on’, ‘under’, ‘beside’. Position of interaction such as whether a fungus is under, in or on the tree.

Association parts -optional, part of the acted upon organism that is interacted with. E.g. leaf, trunk, intestine etc.

Association impact - impact that the association is causing to the acted upon organism. Could be ‘leaf spot’, ‘death’, ‘rot’ etc.

To capture associations, one method is to use the dynamic_sample_occurrence prebuilt form to build a form. This form can refer to a special extension control in it’s user interface - [associations.input_associations_list]. The form will need 2 species_checklist controls, one for the “from” and one for the “to” species lists. Use the @gridIdAttributeId option of the grids to specify a text custom occurrence attribute that can be used to tag which grid the records are associated with. You might also need to use the @extraParams filter of each grid to control the species list or taxon groups that are available for selection in each grid.

An example configuration of this control might be:

@association_type_termlist=My association types
@position_termlist=My association positions
@part_termlist=My association parts
@impact_termlist=My association impacts